Short Bio

• 2001 Graduated at Comenius University, Slovakia in Numerical mathematics and mathematical analysis.
• 2001 – 2005 Doctoral studies at Ghent University in Belgium
• 2005 – 2011 Post Doc at Ghent University, Belgium and FWO Vlaanderen
• 2011 – 2014 Researcher and Lecturer at University of ZIlina, Slovakia
• 2014 – 2019 Associate professor at University of Zilina, Slovakia
• 2019 – current Full professor at University of Zilina

List of my publications

• Ondrusova M., Cimrak I., Analysis of the Behavior of the Red Blood Cell Model in a Tapered Microchannel, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019, 11466 LNBI, 407-417.
• Kovalcikova K., Cimrak I., Bachrata K., Bachraty H., Comparison of Numerical and Laboratory Experiment Examining Deformation of Red Blood Cell, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019, 11466 LNBI, 75-86.
• Cimrák I., Effect of dissipative coupling parameter in a computational model on the inclination angle of red blood cells in a shear flow, ACM International Conference Proceeding Series, 9th International Conference on Computational Systems-Biology and Bioinformatics (CSBio 2018)., 2018, Art.ID 11, pp.5.
• Gusenbauer M., Tóthová R., Mazza G., Brandl M., Schrefl T., Jančigová I., Cimrák I., Cell Damage Index as Computational Indicator for Blood Cell Activation and Damage, Artificial Organs, 2018, 42, (42), 746-755.
• Bušík M., Slavík M., Cimrák I., Dissipative Coupling of Fluid and Immersed Objects for Modelling of Cells in Flow, Computational and mathematical methods in medicine, 2018, 2018, 7842857-, pp.11.
• Kovalčíková K., Bohiniková A., Slavík M., Mazza Guimaraes I., Cimrák I., Red blood cell model validation in dynamic regime, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018, 10813 LNBI, 259-269.
• Ondrusova M., Cimrak I., Dynamical properties of red blood cell model in shear flow, Proceedings of the International Conference on Information and Digital Technologies, IDT 2017, 2017, Art.ID 8024310, 288-292.
• Bušík M., Cimrák I., The calibration of fluid-object interaction in immersed boundary method, EPJ Web of Conferences, 2017, 143, Art.ID 2013.
• Bušík M., Jančigová I., Tóthová R., Cimrák I., Simulation study of rare cell trajectories and capture rate in periodic obstacle arrays, Journal of Computational Science, 2016, 17, 370-376.
• Cimrák I., Collision rates for rare cell capture in periodic obstacle arrays strongly depend on density of cell suspension, Computer Methods in Biomechanics and Biomedical Engineering, 2016, 19, (19), 1525-1530.
• Jančigová I., Cimrák I., Non-uniform force allocation for area preservation in spring network models, International Journal for Numerical Methods in Biomedical Engineering, 2016, 32, (32), Art.ID e02757, pp.11.
• Figurova M., Pudis D., Gaso P., Cimrak I., PDMS microfluidic structures for LOC applications, ELEKTRO 2016 – 11th International Conference, Proceedings, 2016, Art.ID 7512150, 608-611.
• Gusenbauer M., Mazza G., Brandl M., Schrefl T., Tóthová R., Jančigová I., Cimrák I., Sensing Platform for Computational and Experimental Analysis of Blood Cell Mechanical Stress and Activation in Microfluidics, Procedia Engineering, 2016, 168, 1390-1393.
• Cimrak I., Bachrata K., Bachraty H., Jancigova I., Tothova R., Busik M., Slavik M., Gusenbauer M., Object-in-fluid framework in modeling of blood flow in microfluidic channels, Communications – Scientific Letters of the University of Zilina, 2016, 18, (18), 13-20.
• Jančigová I., Cimrák I., A novel approach with non-uniform force allocation for area preservation in spring network models, AIP Conference Proceedings, 2015, 1648, Art.ID 210004.
• Tóthová R., Cimrák I., Local stress analysis of red blood cells in shear flow, AIP Conference Proceedings, 2015, 1648, Art.ID 210003.
• Cimrák I., A simplified model for dynamics of cell rolling and cell-surface adhesion, AIP Conference Proceedings, 2015, 1648, Art.ID 210005.
• Cimrák I., Jancigová I., Tóthová R., Gusenbauer M., Mesh-based modeling of individual cells and their dynamics in biological fluids, Applications of Computational Intelligence in Biomedical Technology. Studies in Computational Intelligence, 2015, 606, pp.28.
• Cimrák I., Gusenbauer M., Jančigová I., An ESPResSo implementation of elastic objects immersed in a fluid, Computer Physics Communications, 2014, 185, (185), 900-907.
• Cimrák I., Jančigová I., Tóthová R., Recent advances in mesh-based modeling of individual cells in biological fluids, DT 2014 – 10th International Conference on Digital Technologies 2014, 2014, Art.ID 6868686, 25-30.
• Tothova R., Jancigova I., Cimrak I., Energy contributions of different elastic moduli in mesh-based modeling of deformable objects, 10th International Conference, ELEKTRO 2014 – Proceedings, 2014, Art.ID 6848976, 634-638.
• Cimrák I., Jančigová I., Bachratá K., Bachratý H., On elasticity of spring network models used in blood flow simulations in espresso, Particle-Based Methods III: Fundamentals and Applications – Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013, 2013, 133-144.
• Cimrák I., Gusenbauer M., Schrefl T., Modelling and simulation of processes in microfluidic devices for biomedical applications, Computers and Mathematics with Applications, 2012, 64, (64), 278-288.